Additional studies are needed to dissect the mechanisms behind th

Additional studies are needed to dissect the mechanisms behind these differential effects of PDCD4. Methods Reagents Fetal Bovine Serum, Horse Serum, Lipofecta mine RNAiMax, Opti MEM medium, Trichostatin A and antibiotic anti mycotic reagents were purchased from Life Technologies. Amino acid free medium was obtained from US Biological. PDCD4 siRNA oligonucleotides, phosphat ase and protease inhibitor cocktails were purchased from Sigma Aldrich. Alpha Modi fication of Eagles Medium was obtained from Wisent. Antibodies Antibodies Inhibitors,Modulators,Libraries to eIF4A, eIF4G, phosphorylated S6K1, and horseradish peroxidase conjugated secondary antibodies were purchased from Cell Signaling Technology. Antibody against PDCD4 was from Cell Signaling Technology or Santa Cruz Biotech nology. Antibodies against phosphorylated PDCD4 were from Sigma Aldrich or Aviva Systems Biology.

Inhibitors,Modulators,Libraries Cell culture L6 myoblasts were cultured in 12 well plates in growth medium until they reached 80% confluency. Cells were then shifted into differentiation medium. Experiments were carried out on day 4 5 of differenti ation. For starvation experiments, myotubes were grown in differentiation medium or starved in amino acid free, serum free Entinostat medium for 12 h. They were then refed in DM for 1 or 3 h. To exam ine the roles of amino acids and growth factors in regulat ing PDCD4 abundance, in some experiments refeeding was done in incubation media of varied composition. To examine the requirement for mTORC1 or the ubiquitin dependent proteolytic system on the regulation of PDCD4, additional refeeding experiments were carried out in the presence of inhibitors of these pathways or equivalent volumes of DMSO.

At the end of the experiments, cells were harvested Inhibitors,Modulators,Libraries in a lysis buffer sodium dodecyl sulphate, 1 mM DTT, supplemented with protease and phosphatase inhibitor cocktails Western blotting and immunoprecipitation Proteins were resolved on 7. 5, 10, or 15% SDS PAGE, transferred onto polyvinylidene difluoride membranes, which were then immunoblotted for the indicated antigens, as previously Inhibitors,Modulators,Libraries described. Immunoblot signals were quan tified using the Carestream Molecular Imaging software. To immunoprecipitate eIF4A or PDCD4, myotubes for were cultured in 10 cm plates. Following appropriate treatments, cells were rinsed in ice cold PBS and then lysed in 500 ul of ice cold lysis buffer, 120 mM NaCl, 1 mM EDTA, 10 mM pyrophosphate, 10 mM glycerol 2 phosphate, 0. 5 mM orthovanadate sup plemented with 0. 03% CHAPS, 1 mM DTT, 0. 5 mM NaV, 1 mM benzamidine, 6. 25 mM N ethyl maleimide and protease inhibitor cocktail. One hundred micrograms of myotube proteins were combined with ei ther anti eIF4A or anti PDCD4 antibodies and the mix rotated overnight at 4 C.

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