In general, we considered a strong candidate to be associated with GO terms such as cell proliferation, expressed in the adult mouse brain, and involved in known pathway(s) that regulated adult neurogenesis. Statistical analyses were performed with JMP v8.0 statistical software (SAS Institute, Cary, NC, USA). For
all analysis of BrdU+ cell counts and analysis on cell cycle, data were expressed as mean values ± SEM and were considered significant at P < 0.05. Two-tailed Student’s t-tests were used when comparing the two parental strains. The linear density of BrdU+ cells of different RI strains were compared by one-way analysis of variance (anova). Normality of data distribution was examined using Shapiro–Wilk’s W test. Both TSA HDAC ic50 age and sex were previously identified as regulatory factors influencing adult neurogenesis (Enwere et al., 2004; Tanapat et al., 1999), so we wanted to examine
whether the number of ICG-001 research buy proliferative cells traveling along the RMS was influenced by these two variables. An age effect on phenotype was examined by regression analysis and a gender effect was assessed by fitting one-way anova as a linear model. We also examined the effects of body weight using linear regression. As all three variables may serve as potential confounding covariates that influence our genetic linkage analysis, we adjusted the RMS linear density for age, body weight and sex. Residuals were obtained
from a multiple regression fitting new all three covariates for linear density (Rosen et al., 2009). The adjusted RMS linear density was then calculated from adding the residuals to the average RMS linear density by strain (Lu et al., 2008). Both the residuals and the adjusted linear density are normally distributed and are not significantly associated with any of the three regressors. The adjusted RMS linear density data are available at the GeneNetwork (Trait ID # 10167) and are positively correlated with the original trait data (r = 0.97; P < 0.0001). The adult RMS is composed largely of neuroblasts that give rise to different subtypes of interneurons in the OB (Lledo et al., 2008). In order to quantify strain differences in the actively dividing population of neuroblasts, we used BrdU, a thymidine analog which gets incorporated into DNA during the S-phase of the cell cycle and is commonly used in the detection of proliferating cells. After 1 h of BrdU exposure, the RMS of A/J mice had a significantly larger population of labeled S-phase (i.e. BrdU-immunoreactive) cells (81 ± 4.56 cells/mm, n = 6) than C57BL/6J mice (49 ± 4.85 cells/mm, n = 9) (P = 0.0006; Fig. 2). Differences in BrdU-labeled cells could be due to either A/J having more rapidly proliferating cells than C57BL/6J or because the proliferating cells in A/J have a relatively longer S-phase to overall cell cycle length compared with C57BL/6J.